The CryFS developers have a comparison page here that might help you decide what to use. There’s a summary table at the bottom that gives a comparison of features between encryption filesystems if you don’t feel like reading through it all.
I personally use and would recommend CryFS because it’s the only one (that I’m aware of) that plays nice with data synchronization software (i.e. doesn’t store the container as a single file) while keeping the directory structure encrypted.